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T-0080   Click here for help

GtoPdb Ligand ID: 14147

Synonyms: T0080
Compound class: Synthetic organic
Comment: A synethtic small molecule formyl peptide receptor antagonist [3].
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 6
Hydrogen bond donors 2
Rotatable bonds 4
Topological polar surface area 74.16
Molecular weight 457.45
XLogP 2.64
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES CC1=CC(=C(C=C1)O)C2=C3C(=NN2)C(=O)N(C4CCOCC4)C3C5=CC=C(C=C5)C(F)(F)F
Isomeric SMILES CC1=CC(C2=C3C(N(C4CCOCC4)C(=O)C3=NN2)C5=CC=C(C=C5)C(F)(F)F)=C(O)C=C1
InChI InChI=1S/C24H22F3N3O3/c1-13-2-7-18(31)17(12-13)20-19-21(29-28-20)23(32)30(16-8-10-33-11-9-16)22(19)14-3-5-15(6-4-14)24(25,26)27/h2-7,12,16,22,31H,8-11H2,1H3,(H,28,29)
InChI Key NLNJUYHGBAJDBQ-UHFFFAOYSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
References
1. He HQ, Liao D, Wang ZG, Wang ZL, Zhou HC, Wang MW, Ye RD. (2013)
Functional characterization of three mouse formyl peptide receptors.
Mol Pharmacol, 83 (2): 389-98. [PMID:23160941]
2. Kim D, Seok OH, Ju S, Kim SY, Kim JM, Lee C, Hwang CS. (2023)
Detection of Nα-terminally formylated native proteins by a pan-N-formyl methionine-specific antibody.
J Biol Chem, 299 (5): 104652. [PMID:36990220]
3. Li Z, Li Y, Han J, Zhu Z, Li M, Liu Q, Wang Y, Shi FD. (2021)
Formyl peptide receptor 1 signaling potentiates inflammatory brain injury.
Sci Transl Med, 13 (605). [PMID:34349037]
4. Schepetkin IA, Kirpotina LN, Khlebnikov AI, Cheng N, Ye RD, Quinn MT. (2014)
Antagonism of human formyl peptide receptor 1 (FPR1) by chromones and related isoflavones.
Biochem Pharmacol, 92 (4): 627-41. [PMID:25450672]
5. Stenfeldt AL, Karlsson J, Wennerås C, Bylund J, Fu H, Dahlgren C. (2007)
Cyclosporin H, Boc-MLF and Boc-FLFLF are antagonists that preferentially inhibit activity triggered through the formyl peptide receptor.
Inflammation, 30 (6): 224-9. [PMID:17687636]